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ForumsCOA & Analytical TestingLC-MS/MS vs HPLC for peptide analysis — which is more reliable? Page 4

LC-MS/MS vs HPLC for peptide analysis — which is more reliable?

HPLC_Greg Wed, Jun 3, 2026 at 8:25 AM 19 replies 492 viewsPage 4 of 4
Dr.PathRoch
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Jun 6, 2026 at 6:38 PM#16
paige_pharma said:
Reconstituted peptide stability data for certificates of analysis: I had Janoshik test my reconstituted vial at day 1, day 14, and day 28 stored in…

Same pattern here, and in the same order. Nothing to add that would improve it.

Last edited: Jun 7, 2026 at 12:38 AM
28 1MikeFit_NJ, InsuranceTom, WendyG_ATL and 25 others
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james_edin
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Jun 7, 2026 at 5:16 AM#17

Clinical perspective, offered as context rather than as advice.

Mass spectrometry confirmation for certificates of analysis: beyond HPLC purity, mass spec tells you the molecule's exact molecular weight. This confirms identity — not just purity.

Why this matters: HPLC can show you a "pure" compound, but if it's pure of the WRONG compound, purity is meaningless. Mass spec at m/z 4113.58 Da confirms it's actually semaglutide. My Janoshik report includes both HPLC and mass spec.

If your testing provider only offers HPLC, consider upgrading to include mass spec for at least your first batch from a new vendor.

29 2Dr.PathRoch, mona_PHX, andrew_nyc and 26 others
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PharmHunterJen
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Jun 7, 2026 at 3:54 PM#18
james_edin said:
Mass spectrometry confirmation for certificates of analysis: beyond HPLC purity, mass spec tells you the molecule's exact molecular weight.

Second this.

Last edited: Jun 7, 2026 at 9:54 PM
30 3kevin_tulsa, Dr.PainCLE, mike_mealprep and 27 others
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Sigma-Aldrich — Research-Grade Standards

Certified reference materials, analytical reagents, and research-grade standards for peptide verification. Trusted by laboratories worldwide.

Shop Reference Standards
JenPlateau
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Missouri
Jun 8, 2026 at 2:32 AM#19
james_edin said:
Mass spectrometry confirmation for certificates of analysis: beyond HPLC purity, mass spec tells you the molecule's exact molecular weight.

My HPLC chromatogram analysis for certificates of analysis — I sent my batch to Janoshik and here's what the results showed:

Main peak retention time: 15.7 minutes (consistent with semaglutide reference standard)
Peak purity: 98.7%
Related substances: 0.6% (single impurity at 9.2 minutes — likely a synthesis intermediate)
Mass spec: m/z 4113.6 (matches expected molecular weight)

This is a clean result. The mass spec confirmation is particularly important — it proves the molecule is actually semaglutide and not a substitution.

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Admin
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Jun 8, 2026 at 1:09 PM#20

Moderator note: the sourcing question belongs in the vendor section and has been split out. Carry on.

3 1PeptideSynthNJ, Dr.KarenChen, Dr.NateNeph
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